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rdp recombination detection method  (CH Instruments)

 
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    CH Instruments rdp recombination detection method
    Rdp Recombination Detection Method, supplied by CH Instruments, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/result/rdp recombination detection method/product/CH Instruments
    Average 90 stars, based on 1 article reviews
    rdp recombination detection method - by Bioz Stars, 2026-05
    90/100 stars

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    Recombination trend analysis of EV-G Epidemic Strains. Recombination events among the twenty-eight EV-G strains (see <xref ref-type=Figure 2 ) were analyzed using RDP software. Seventeen high-confidence events, consistently identified by all seven algorithms (RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, and 3Seq), were selected for further characterization. Their recombination maps are displayed below, aligned with a reference EVG-SH-2024 ( PV984503 ) genome schematic for comparative analysis. " width="100%" height="100%">

    Journal: Frontiers in Cellular and Infection Microbiology

    Article Title: Isolation and characterization of an enterovirus G strain causing diarrhea and gut microbiota dysbiosis in piglets

    doi: 10.3389/fcimb.2025.1699507

    Figure Lengend Snippet: Recombination trend analysis of EV-G Epidemic Strains. Recombination events among the twenty-eight EV-G strains (see Figure 2 ) were analyzed using RDP software. Seventeen high-confidence events, consistently identified by all seven algorithms (RDP, GENECONV, BootScan, MaxChi, Chimaera, SiScan, and 3Seq), were selected for further characterization. Their recombination maps are displayed below, aligned with a reference EVG-SH-2024 ( PV984503 ) genome schematic for comparative analysis.

    Article Snippet: Recombination detection program (RDP) analysis of the full-length EVG-SH-2024 genome, together with other EV-G sequences, indicated close relatedness to strain 13-03212/United States/2014 ( KF985175 ) in the genomic region spanning nt 1, 318–3, 830, as determined by SimPlot/SIScan analysis (P ≤ 7.468 × 10 -30 ) ( ).

    Techniques: Software

    Genetic recombination events of GNU-2353 and GNU-2377 detected by RDP4 software.

    Journal: Transboundary and Emerging Diseases

    Article Title: Comparative Genomic and Biological Investigation of NADC30- and NADC34-Like PRRSV Strains Isolated in South Korea

    doi: 10.1155/tbed/9015349

    Figure Lengend Snippet: Genetic recombination events of GNU-2353 and GNU-2377 detected by RDP4 software.

    Article Snippet: Potential recombination events were analyzed using recombination detection program (RDP), SimPlot, and phylogeny, as described previously [ ].

    Techniques: Software